Detailed information of SNP:
|
SNP ID:
sf1216753669(Gbrowse)
Chromosome: chr12 Position: 16753669 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 93.98% | 6.02% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 492 | 89.84% | 10.16% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 54.44% | 45.56% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216753669 | A->G | INTERGENIC | None |