Detailed information of SNP:
|
SNP ID:
sf1216754912(Gbrowse)
Chromosome: chr12 Position: 16754912 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 97.13% | 2.87% |
| All Indica | 775 | 95.74% | 4.26% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 365 | 94.52% | 5.48% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 203 | 97.54% | 2.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216754912 | G->A | INTERGENIC | None |