Detailed information of SNP:
|
SNP ID:
sf1216802282(Gbrowse)
Chromosome: chr12 Position: 16802282 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 63.25% | 36.75% |
| All Indica | 760 | 81.05% | 18.95% |
| All Japonica | 464 | 31.25% | 68.75% |
| Aus | 63 | 82.54% | 17.46% |
| Indica I | 361 | 83.66% | 16.34% |
| Indica II | 203 | 80.79% | 19.21% |
| Indica Intermediate | 196 | 76.53% | 23.47% |
| Temperate Japonica | 313 | 16.93% | 83.07% |
| Tropical Japonica | 86 | 53.49% | 46.51% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216802282 | C->T | INTERGENIC | None |