Detailed information of SNP:
|
SNP ID:
sf1216822789(Gbrowse)
Chromosome: chr12 Position: 16822789 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1222 | 60.72% | 39.28% |
| All Indica | 654 | 36.39% | 63.61% |
| All Japonica | 468 | 93.16% | 6.84% |
| Aus | 56 | 64.29% | 35.71% |
| Indica I | 296 | 31.76% | 68.24% |
| Indica II | 176 | 38.07% | 61.93% |
| Indica Intermediate | 182 | 42.31% | 57.69% |
| Temperate Japonica | 332 | 97.89% | 2.11% |
| Tropical Japonica | 73 | 75.34% | 24.66% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 32 | 68.75% | 31.25% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216822789 | A->G | LOC_Os12g28470(LOC_Os12g28470.1) | INTRON |