Detailed information of SNP:
|
SNP ID:
sf1216837039(Gbrowse)
Chromosome: chr12 Position: 16837039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 91.80% | 8.20% |
| All Indica | 796 | 88.82% | 11.18% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216837039 | C->T | LOC_Os12g28500(LOC_Os12g28500.1) | Synonymous |