Detailed information of SNP:
|
SNP ID:
sf1216837118(Gbrowse)
Chromosome: chr12 Position: 16837118 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 64.28% | 35.72% |
| All Indica | 780 | 89.87% | 10.13% |
| All Japonica | 493 | 17.85% | 82.15% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 198 | 85.86% | 14.14% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216837118 | C->A | LOC_Os12g28500(LOC_Os12g28500.1) | INTRON |