Detailed information of SNP:
|
SNP ID:
sf1216849755(Gbrowse)
Chromosome: chr12 Position: 16849755 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 50.04% | 49.96% |
| All Indica | 780 | 32.56% | 67.44% |
| All Japonica | 491 | 82.48% | 17.52% |
| Aus | 64 | 31.25% | 68.75% |
| Indica I | 364 | 40.38% | 59.62% |
| Indica II | 210 | 17.14% | 82.86% |
| Indica Intermediate | 206 | 34.47% | 65.53% |
| Temperate Japonica | 333 | 92.79% | 7.21% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216849755 | G->A | INTERGENIC | None |