Detailed information of SNP:
|
SNP ID:
sf1216887488(Gbrowse)
Chromosome: chr12 Position: 16887488 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 77.23% | 22.77% |
| All Indica | 792 | 65.91% | 34.09% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 59 | 89.83% | 10.17% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216887488 | C->A | LOC_Os12g28580(LOC_Os12g28580.1) | Non-Synonymous SNP |