Detailed information of SNP:
|
SNP ID:
sf1216887580(Gbrowse)
Chromosome: chr12 Position: 16887580 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.07% | 34.93% |
| All Indica | 797 | 47.05% | 52.95% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 57.75% | 42.25% |
| Indica II | 212 | 23.11% | 76.89% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216887580 | T->C | LOC_Os12g28580(LOC_Os12g28580.1) | Non-Synonymous SNP |