Detailed information of SNP:
|
SNP ID:
sf1216887772(Gbrowse)
Chromosome: chr12 Position: 16887772 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 76.35% | 23.65% |
| All Indica | 786 | 67.43% | 32.57% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 366 | 89.07% | 10.93% |
| Indica II | 211 | 31.28% | 68.72% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216887772 | T->C | INTERGENIC | None |