Detailed information of SNP:
|
SNP ID:
sf1216887878(Gbrowse)
Chromosome: chr12 Position: 16887878 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 76.74% | 23.26% |
| All Indica | 787 | 67.85% | 32.15% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 367 | 89.10% | 10.90% |
| Indica II | 211 | 32.70% | 67.30% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216887878 | G->A | INTERGENIC | None |