Detailed information of SNP:
|
SNP ID:
sf1216892734(Gbrowse)
Chromosome: chr12 Position: 16892734 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 68.37% | 31.63% |
| All Indica | 793 | 88.27% | 11.73% |
| All Japonica | 495 | 32.53% | 67.47% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 208 | 84.62% | 15.38% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 334 | 17.37% | 82.63% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216892734 | A->G | INTERGENIC | None |