Detailed information of SNP:
|
SNP ID:
sf1216892756(Gbrowse)
Chromosome: chr12 Position: 16892756 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 73.18% | 26.82% |
| All Indica | 791 | 94.82% | 5.18% |
| All Japonica | 492 | 33.94% | 66.06% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 334 | 17.96% | 82.04% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 64 | 48.44% | 51.56% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216892756 | G->A | INTERGENIC | None |