Detailed information of SNP:
|
SNP ID:
sf1216895565(Gbrowse)
Chromosome: chr12 Position: 16895565 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 91.11% | 8.89% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216895565 | T->C | INTERGENIC | None |