Detailed information of SNP:
|
SNP ID:
sf1216898974(Gbrowse)
Chromosome: chr12 Position: 16898974 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 64.72% | 35.28% |
| All Indica | 794 | 83.63% | 16.37% |
| All Japonica | 492 | 31.10% | 68.90% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 210 | 73.81% | 26.19% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 333 | 15.62% | 84.38% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216898974 | C->T | INTERGENIC | None |