Detailed information of SNP:
|
SNP ID:
sf1216900633(Gbrowse)
Chromosome: chr12 Position: 16900633 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 52.31% | 47.69% |
| All Indica | 790 | 71.77% | 28.23% |
| All Japonica | 494 | 18.83% | 81.17% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 211 | 45.02% | 54.98% |
| Indica Intermediate | 207 | 69.08% | 30.92% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 91 | 59.34% | 40.66% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216900633 | A->C | INTERGENIC | None |