Detailed information of SNP:
|
SNP ID:
sf1216908177(Gbrowse)
Chromosome: chr12 Position: 16908177 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 95.55% | 4.45% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216908177 | A->C | LOC_Os12g28600(LOC_Os12g28600.1) | INTRON |
| sf1216908177 | A->C | LOC_Os12g28600(LOC_Os12g28600.1) | SNPs that disrupt splice sites |