Detailed information of SNP:
|
SNP ID:
sf1216924316(Gbrowse)
Chromosome: chr12 Position: 16924316 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 56.44% | 43.56% |
| All Indica | 768 | 37.11% | 62.89% |
| All Japonica | 487 | 90.76% | 9.24% |
| Aus | 64 | 29.69% | 70.31% |
| Indica I | 355 | 38.59% | 61.41% |
| Indica II | 206 | 29.61% | 70.39% |
| Indica Intermediate | 207 | 42.03% | 57.97% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 85 | 58.82% | 41.18% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216924316 | A->G | INTERGENIC | None |