Detailed information of SNP:
|
SNP ID:
sf1216924766(Gbrowse)
Chromosome: chr12 Position: 16924766 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 97.35% | 2.65% |
| All Indica | 785 | 96.43% | 3.57% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 369 | 97.29% | 2.71% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216924766 | C->T | INTERGENIC | None |