Detailed information of SNP:
|
SNP ID:
sf1216924812(Gbrowse)
Chromosome: chr12 Position: 16924812 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 95.12% | 4.88% |
| All Indica | 795 | 92.96% | 7.04% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216924812 | T->C | INTERGENIC | None |