Detailed information of SNP:
|
SNP ID:
sf1216925765(Gbrowse)
Chromosome: chr12 Position: 16925765 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 97.24% | 2.76% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216925765 | A->C | LOC_Os12g28640(LOC_Os12g28640.1) | INTRON |