Detailed information of SNP:
|
SNP ID:
sf1216958167(Gbrowse)
Chromosome: chr12 Position: 16958167 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 95.80% | 4.20% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 488 | 98.16% | 1.84% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 92.05% | 7.95% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216958167 | C->G | LOC_Os12g28710(LOC_Os12g28710.1) | Synonymous |