Detailed information of SNP:
|
SNP ID:
sf1216960420(Gbrowse)
Chromosome: chr12 Position: 16960420 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.39% | 49.61% |
| All Indica | 799 | 71.46% | 28.54% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216960420 | T->C | INTERGENIC | None |