Detailed information of SNP:
|
SNP ID:
sf1216962151(Gbrowse)
Chromosome: chr12 Position: 16962151 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 61.03% | 38.97% |
| All Indica | 794 | 32.62% | 67.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 13.87% | 86.13% |
| Indica II | 210 | 63.33% | 36.67% |
| Indica Intermediate | 209 | 35.41% | 64.59% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216962151 | A->G | LOC_Os12g28720(LOC_Os12g28720.1) | INTRON |