Detailed information of SNP:
|
SNP ID:
sf1216964881(Gbrowse)
Chromosome: chr12 Position: 16964881 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 50.92% | 49.08% |
| All Indica | 793 | 73.14% | 26.86% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 210 | 45.71% | 54.29% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216964881 | G->C | LOC_Os12g28720(LOC_Os12g28720.1) | Synonymous |