Detailed information of SNP:
|
SNP ID:
sf1216980061(Gbrowse)
Chromosome: chr12 Position: 16980061 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 67.50% | 32.50% |
| All Indica | 783 | 96.81% | 3.19% |
| All Japonica | 462 | 12.34% | 87.66% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 201 | 97.01% | 2.99% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 61 | 65.57% | 34.43% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216980061 | G->A | INTERGENIC | None |