Detailed information of SNP:
|
SNP ID:
sf1216980089(Gbrowse)
Chromosome: chr12 Position: 16980089 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.62% | 24.38% |
| All Indica | 795 | 71.32% | 28.68% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216980089 | T->A | INTERGENIC | None |