Detailed information of SNP:
|
SNP ID:
sf1216986957(Gbrowse)
Chromosome: chr12 Position: 16986957 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.23% | 6.77% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216986957 | G->A | INTERGENIC | None |