Detailed information of SNP:
|
SNP ID:
sf1216987297(Gbrowse)
Chromosome: chr12 Position: 16987297 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 70.97% | 29.03% |
| All Indica | 776 | 72.42% | 27.58% |
| All Japonica | 487 | 73.51% | 26.49% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 199 | 39.20% | 60.80% |
| Indica Intermediate | 205 | 70.73% | 29.27% |
| Temperate Japonica | 333 | 88.59% | 11.41% |
| Tropical Japonica | 91 | 20.88% | 79.12% |
| Japonica Intermediate | 63 | 69.84% | 30.16% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216987297 | G->A | INTERGENIC | None |