Detailed information of SNP:
|
SNP ID:
sf1216996484(Gbrowse)
Chromosome: chr12 Position: 16996484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 92.68% | 7.32% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 459 | 79.52% | 20.48% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 306 | 77.78% | 22.22% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 60 | 63.33% | 36.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216996484 | C->T | INTERGENIC | None |