Detailed information of SNP:
|
SNP ID:
sf1217002284(Gbrowse)
Chromosome: chr12 Position: 17002284 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.94% | 32.06% |
| All Indica | 799 | 48.94% | 51.06% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217002284 | C->T | INTERGENIC | None |