Detailed information of SNP:
|
SNP ID:
sf1217033731(Gbrowse)
Chromosome: chr12 Position: 17033731 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 60.91% | 39.09% |
| All Indica | 791 | 33.63% | 66.37% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 371 | 6.74% | 93.26% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 208 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217033731 | T->A | INTERGENIC | None |