Detailed information of SNP:
|
SNP ID:
sf1217036164(Gbrowse)
Chromosome: chr12 Position: 17036164 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 60.71% | 39.29% |
| All Indica | 790 | 33.54% | 66.46% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 371 | 6.47% | 93.53% |
| Indica II | 210 | 74.76% | 25.24% |
| Indica Intermediate | 209 | 40.19% | 59.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217036164 | G->A | INTERGENIC | None |