Detailed information of SNP:
|
SNP ID:
sf1217036998(Gbrowse)
Chromosome: chr12 Position: 17036998 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 57.76% | 42.24% |
| All Indica | 789 | 30.54% | 69.46% |
| All Japonica | 490 | 97.14% | 2.86% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 5.88% | 94.12% |
| Indica II | 210 | 70.00% | 30.00% |
| Indica Intermediate | 205 | 35.12% | 64.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217036998 | T->C | LOC_Os12g28830(LOC_Os12g28830.1) | INTRON |