Detailed information of SNP:
|
SNP ID:
sf1217039724(Gbrowse)
Chromosome: chr12 Position: 17039724 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 96.25% | 3.75% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 492 | 92.68% | 7.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217039724 | C->T | LOC_Os12g28830(LOC_Os12g28830.1) | Non-Synonymous SNP |