Detailed information of SNP:
|
SNP ID:
sf1217040244(Gbrowse)
Chromosome: chr12 Position: 17040244 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 58.44% | 41.56% |
| All Indica | 787 | 31.77% | 68.23% |
| All Japonica | 490 | 98.16% | 1.84% |
| Aus | 51 | 70.59% | 29.41% |
| Indica I | 374 | 8.02% | 91.98% |
| Indica II | 206 | 69.42% | 30.58% |
| Indica Intermediate | 207 | 37.20% | 62.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217040244 | C->T | LOC_Os12g28830(LOC_Os12g28830.1) | Synonymous |