Detailed information of SNP:
|
SNP ID:
sf1217040900(Gbrowse)
Chromosome: chr12 Position: 17040900 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 55.81% | 44.19% |
| All Indica | 779 | 29.27% | 70.73% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 53 | 41.51% | 58.49% |
| Indica I | 372 | 5.65% | 94.35% |
| Indica II | 199 | 67.84% | 32.16% |
| Indica Intermediate | 208 | 34.62% | 65.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217040900 | T->G | LOC_Os12g28830(LOC_Os12g28830.1) | INTRON |