Detailed information of SNP:
|
SNP ID:
sf1217042482(Gbrowse)
Chromosome: chr12 Position: 17042482 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 69.20% | 30.80% |
| All Indica | 786 | 95.80% | 4.20% |
| All Japonica | 495 | 23.23% | 76.77% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 204 | 94.12% | 5.88% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217042482 | G->C | INTERGENIC | None |