Detailed information of SNP:
|
SNP ID:
sf1217046133(Gbrowse)
Chromosome: chr12 Position: 17046133 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 72.77% | 27.23% |
| All Indica | 784 | 52.42% | 47.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 362 | 24.86% | 75.14% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 209 | 67.94% | 32.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217046133 | G->A | INTERGENIC | None |