Detailed information of SNP:
|
SNP ID:
sf1217047868(Gbrowse)
Chromosome: chr12 Position: 17047868 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 74.73% | 25.27% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 495 | 34.75% | 65.25% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 334 | 16.17% | 83.83% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217047868 | A->C | LOC_Os12g28850(LOC_Os12g28850.1) | INTRON |