Detailed information of SNP:
|
SNP ID:
sf1217048357(Gbrowse)
Chromosome: chr12 Position: 17048357 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 68.93% | 31.07% |
| All Indica | 785 | 95.67% | 4.33% |
| All Japonica | 494 | 23.68% | 76.32% |
| Aus | 56 | 85.71% | 14.29% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217048357 | G->T | LOC_Os12g28850(LOC_Os12g28850.1) | SNPs that introduce stop codons |