Detailed information of SNP:
|
SNP ID:
sf1217049905(Gbrowse)
Chromosome: chr12 Position: 17049905 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 67.70% | 32.30% |
| All Indica | 782 | 93.73% | 6.27% |
| All Japonica | 494 | 23.68% | 76.32% |
| Aus | 60 | 76.67% | 23.33% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217049905 | A->G | LOC_Os12g28850(LOC_Os12g28850.1) | Synonymous |