Detailed information of SNP:
|
SNP ID:
sf1217050390(Gbrowse)
Chromosome: chr12 Position: 17050390 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 61.70% | 38.30% |
| All Indica | 792 | 34.22% | 65.78% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 7.77% | 92.23% |
| Indica II | 209 | 75.60% | 24.40% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217050390 | T->C | LOC_Os12g28850(LOC_Os12g28850.1) | Non-Synonymous SNP |