Detailed information of SNP:
SNP ID:
sf1217050390(Gbrowse)
Chromosome: chr12 Position: 17050390 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1410 | 61.70% | 38.30% |
All Indica | 792 | 34.22% | 65.78% |
All Japonica | 496 | 99.19% | 0.81% |
Aus | 66 | 95.45% | 4.55% |
Indica I | 373 | 7.77% | 92.23% |
Indica II | 209 | 75.60% | 24.40% |
Indica Intermediate | 210 | 40.00% | 60.00% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 96.81% | 3.19% |
Japonica Intermediate | 67 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1217050390 | T->C | LOC_Os12g28850(LOC_Os12g28850.1) | Non-Synonymous SNP |