Detailed information of SNP:
|
SNP ID:
sf1217051305(Gbrowse)
Chromosome: chr12 Position: 17051305 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 69.32% | 30.68% |
| All Indica | 790 | 95.06% | 4.94% |
| All Japonica | 496 | 24.40% | 75.60% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217051305 | T->C | INTERGENIC | None |