Detailed information of SNP:
|
SNP ID:
sf1217058247(Gbrowse)
Chromosome: chr12 Position: 17058247 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 86.19% | 13.81% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217058247 | T->G | INTERGENIC | None |