Detailed information of SNP:
|
SNP ID:
sf1217058549(Gbrowse)
Chromosome: chr12 Position: 17058549 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 90.07% | 9.93% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 43 | 95.35% | 4.65% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217058549 | C->T | INTERGENIC | None |