Detailed information of SNP:
|
SNP ID:
sf1217059549(Gbrowse)
Chromosome: chr12 Position: 17059549 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 77.72% | 22.28% |
| All Indica | 798 | 72.06% | 27.94% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 34.91% | 65.09% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217059549 | T->C | INTERGENIC | None |