Detailed information of SNP:
|
SNP ID:
sf1217059599(Gbrowse)
Chromosome: chr12 Position: 17059599 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.53% | 45.47% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 495 | 5.86% | 94.14% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217059599 | T->G | INTERGENIC | None |