Detailed information of SNP:
|
SNP ID:
sf1217059965(Gbrowse)
Chromosome: chr12 Position: 17059965 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 55.04% | 44.96% |
| All Indica | 769 | 30.69% | 69.31% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 368 | 5.43% | 94.57% |
| Indica II | 201 | 71.64% | 28.36% |
| Indica Intermediate | 200 | 36.00% | 64.00% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217059965 | T->G | INTERGENIC | None |