Detailed information of SNP:
|
SNP ID:
sf1217067309(Gbrowse)
Chromosome: chr12 Position: 17067309 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.40% | 42.60% |
| All Indica | 798 | 52.51% | 47.49% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217067309 | A->T | INTERGENIC | None |