Detailed information of SNP:



SNP ID: sf1217067309(Gbrowse)

Chromosome: chr12

Position: 17067309
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1418 57.40% 42.60%
All Indica798 52.51% 47.49%
All Japonica497 75.25% 24.75%
Aus67 7.46% 92.54%
Indica I375 78.40% 21.60%
Indica II213 19.25% 80.75%
Indica Intermediate210 40.00% 60.00%
Temperate Japonica335 97.31% 2.69%
Tropical Japonica94 7.45% 92.55%
Japonica Intermediate68 60.29% 39.71%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 38.10% 61.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1217067309 A->T INTERGENIC None